
@article{shkoporov_crass001_2018,
	title = {Φ{CrAss}001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis},
	volume = {9},
	issn = {2041-1723},
	url = {https://doi.org/10.1038/s41467-018-07225-7},
	pages = {4781},
	number = {1},
	journaltitle = {Nature Communications},
	author = {Shkoporov, Andrey N. and Khokhlova, Ekaterina V. and Fitzgerald, C. Brian and Stockdale, Stephen R. and Draper, Lorraine A. and Ross, R. Paul and Hill, Colin},
	urldate = {2018-11-20},
	date = {2018-12},
	langid = {english},
	file = {Kokoteksti:/Users/karkman/Zotero/storage/J7MUMBLP/Shkoporov ym. - 2018 - ΦCrAss001 represents the most abundant bacteriopha.pdf:application/pdf}
}

@article{bengtsson-palme_shotgun_2014,
	title = {Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India},
	volume = {5},
	issn = {1664-302X},
	url = {https://doi.org/10.3389/fmicb.2014.00648},
	pages = {648},
	journaltitle = {Frontiers in Microbiology},
	author = {Bengtsson-Palme, Johan and Boulund, Fredrik and Fick, Jerker and Kristiansson, Erik and Larsson, D. G. Joakim},
	urldate = {2018-09-06},
	date = {2014-12-02}
}

@article{stachler_correlation_2018,
	title = {Correlation of {crAssphage} {qPCR} Markers with Culturable and Molecular Indicators of Human Fecal Pollution in an Impacted Urban Watershed},
	volume = {52},
	issn = {0013-936X, 1520-5851},
	url = {https://doi.org/10.1021/acs.est.8b00638},
	pages = {7505--7512},
	number = {13},
	journaltitle = {Environmental Science \& Technology},
	author = {Stachler, Elyse and Akyon, Benay and de Carvalho, Nathalia Aquino and Ference, Christian and Bibby, Kyle},
	urldate = {2018-08-27},
	date = {2018-07-03},
	langid = {english}
}

@article{ahmed_precipitation_2018,
	title = {Precipitation influences pathogenic bacteria and antibiotic resistance gene abundance in storm drain outfalls in coastal sub-tropical waters},
	volume = {116},
	issn = {01604120},
	url = {https://doi.org/10.1016/j.envint.2018.04.005},
	pages = {308--318},
	journaltitle = {Environment International},
	author = {Ahmed, Warish and Zhang, Qian and Lobos, Aldo and Senkbeil, Jacob and Sadowsky, Michael J. and Harwood, Valerie J. and Saeidi, Nazanin and Marinoni, Oswald and Ishii, Satoshi},
	urldate = {2018-06-01},
	date = {2018-07},
	langid = {english}
}

@article{stachler_metagenomic_2014,
	title = {Metagenomic Evaluation of the Highly Abundant Human Gut Bacteriophage {CrAssphage} for Source Tracking of Human Fecal Pollution},
	volume = {1},
	issn = {2328-8930, 2328-8930},
	url = {https://doi.org/10.1021/ez500266s},
	pages = {405--409},
	number = {10},
	journaltitle = {Environmental Science \& Technology Letters},
	author = {Stachler, Elyse and Bibby, Kyle},
	urldate = {2018-05-16},
	date = {2014-10-14},
	langid = {english}
}

@article{stachler_quantitative_2017,
	title = {Quantitative {CrAssphage} {PCR} Assays for Human Fecal Pollution Measurement},
	volume = {51},
	issn = {0013-936X, 1520-5851},
	url = {https://doi.org/10.1021/acs.est.7b02703},
	pages = {9146--9154},
	number = {16},
	journaltitle = {Environmental Science \& Technology},
	author = {Stachler, Elyse and Kelty, Catherine and Sivaganesan, Mano and Li, Xiang and Bibby, Kyle and Shanks, Orin C.},
	urldate = {2018-05-16},
	date = {2017-08-15},
	langid = {english}
}

@article{karkman_antibiotic-resistance_2018,
	title = {Antibiotic-Resistance Genes in Waste Water},
	volume = {26},
	issn = {0966842X},
	url = {https://doi.org/10.1016/j.tim.2017.09.005},
	pages = {220--228},
	number = {3},
	journaltitle = {Trends in Microbiology},
	author = {Karkman, Antti and Do, Thi Thuy and Walsh, Fiona and Virta, Marko P.J.},
	urldate = {2018-05-16},
	date = {2018-03},
	langid = {english}
}

@article{kristiansson_pyrosequencing_2011,
	title = {Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements},
	volume = {6},
	issn = {1932-6203},
	url = {https://doi.org/10.1371/journal.pone.0017038},
	pages = {e17038},
	number = {2},
	journaltitle = {{PLoS} {ONE}},
	author = {Kristiansson, Erik and Fick, Jerker and Janzon, Anders and Grabic, Roman and Rutgersson, Carolin and Weijdegård, Birgitta and Söderström, Hanna and Larsson, D. G. Joakim},
	editor = {Rodriguez-Valera, Francisco},
	urldate = {2018-03-15},
	date = {2011-02-16},
	langid = {english}
}

@article{garcia-aljaro_determination_2017,
	title = {Determination of {crAssphage} in water samples and applicability for tracking human faecal pollution},
	volume = {10},
	issn = {17517915},
	url = {https://doi.org/10.1111/1751-7915.12841},
	pages = {1775--1780},
	number = {6},
	journaltitle = {Microbial Biotechnology},
	author = {García-Aljaro, Cristina and Ballesté, Elisenda and Muniesa, Maite and Jofre, Juan},
	urldate = {2018-03-15},
	date = {2017-11},
	langid = {english}
}

@article{ahmed_evaluation_2018,
	title = {Evaluation of the novel {crAssphage} marker for sewage pollution tracking in storm drain outfalls in Tampa, Florida},
	volume = {131},
	issn = {00431354},
	url = {https://doi.org/10.1016/j.watres.2017.12.011},
	pages = {142--150},
	journaltitle = {Water Research},
	author = {Ahmed, Warish and Lobos, Aldo and Senkbeil, Jacob and Peraud, Jayme and Gallard, Javier and Harwood, Valerie J.},
	urldate = {2018-03-15},
	date = {2018-03},
	langid = {english}
}

@article{guo_metagenomic_2017,
	title = {Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements},
	volume = {123},
	issn = {00431354},
	url = {https://doi.org/10.1016/j.watres.2017.07.002},
	pages = {468--478},
	journaltitle = {Water Research},
	author = {Guo, Jianhua and Li, Jie and Chen, Hui and Bond, Philip L. and Yuan, Zhiguo},
	urldate = {2017-09-19},
	date = {2017-10},
	langid = {english}
}

@article{rizzo_urban_2013,
	title = {Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review},
	volume = {447},
	issn = {00489697},
	url = {https://doi.org/10.1016/j.scitotenv.2013.01.032},
	shorttitle = {Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment},
	pages = {345--360},
	journaltitle = {Science of The Total Environment},
	author = {Rizzo, L. and Manaia, C. and Merlin, C. and Schwartz, T. and Dagot, C. and Ploy, M.C. and Michael, I. and Fatta-Kassinos, D.},
	urldate = {2017-01-24},
	date = {2013-03},
	langid = {english}
}

@article{dutilh_highly_2014,
	title = {A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes},
	volume = {5},
	url = {https://doi.org/10.1038/ncomms5498},
	pages = {4498},
	journaltitle = {Nature Communications},
	shortjournal = {Nature Communications},
	author = {Dutilh, Bas E. and Cassman, Noriko and {McNair}, Katelyn and Sanchez, Savannah E. and Silva, Genivaldo G. Z. and Boling, Lance and Barr, Jeremy J. and Speth, Daan R. and Seguritan, Victor and Aziz, Ramy K. and Felts, Ben and Dinsdale, Elizabeth A. and Mokili, John L. and Edwards, Robert A.},
	date = {2014}
}

@article{ogilvie_resolution_2017,
	title = {Resolution of habitat-associated ecogenomic signatures in bacteriophage genomes and application to microbial source tracking},
	issn = {1751-7362, 1751-7370},
	url = {https://doi.org/10.1038/s41396-017-0015-7},
	journaltitle = {The {ISME} Journal},
	author = {Ogilvie, Lesley A. and Nzakizwanayo, Jonathan and Guppy, Fergus M. and Dedi, Cinzia and Diston, David and Taylor, Huw and Ebdon, James and Jones, Brian V.},
	urldate = {2018-05-16},
	date = {2017-12-19},
	langid = {english}
}
